Visualization of chromosomal locations
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6.8 years ago
sagardesai91 ▴ 50

I need a tool to visualize multiple (approx 6000) chromosomal locations on an ideogram. They are in the form of bed file

Eg:

chr1 startpos endpos

Is there a tool to do this?

genome • 1.6k views
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6.8 years ago
igor 13k

You can use a genome browser for that. Most will accept a BED file. IGV (Java app) and UCSC Genome Browser (web-based) are probably most popular, but it really depends on your field. There is a very comprehensive list available here.

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6.8 years ago
Dan D 7.3k

Integrative Genomics Viewer can load BED files and overlay the intervals on the genome of your choice.

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Thanks alot Dan!

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