I need a tool to visualize multiple (approx 6000) chromosomal locations on an ideogram. They are in the form of bed file
chr1 startpos endpos
Is there a tool to do this?
You can use a genome browser for that. Most will accept a BED file. IGV (Java app) and UCSC Genome Browser (web-based) are probably most popular, but it really depends on your field. There is a very comprehensive list available here.
Integrative Genomics Viewer can load BED files and overlay the intervals on the genome of your choice.
Thanks alot Dan!
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