Question: Generating genetic map file to use as input for shapeit
1
gravatar for sale12302006
3.0 years ago by
sale1230200610
United Kingdom
sale1230200610 wrote:

Dear All,

Can someone help me with this, please? I am trying to produce genetic map file that will contain the following three columns below from vcf file:

pposition    rrate     gposition
72765        0.12455   0.00000
94172        0.12458   0.00266
94426        0.12461   0.00269
95949        0.12461   0.00288
98087        0.12460   0.00315

Where:

  • First column: The physical position (bp)
  • Second column: The recombination rate (cM/Mb)
  • Third column: The genetic position (cM)

Your help would be appreciated.

genome • 1.3k views
ADD COMMENTlink modified 5 months ago by RamRS20k • written 3.0 years ago by sale1230200610
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