Question: Reference panel for shapeit
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gravatar for sale12302006
4.1 years ago by
sale1230200630
United Kingdom
sale1230200630 wrote:

Dear All, I am trying to phase my vcf file that contain one population of five individuals and generate .hap file with shapeit. The problem that I am encountering is that shapeit will not run and instead require a reference panel because the number of individuals is less than 100. Is it possible to run shapeit with only these individuals and how would I produce a reference panel, please? By the way, I am working on chickens genome.

Your help would be appreciated.

genome • 1.5k views
ADD COMMENTlink modified 4.0 years ago by Biostar ♦♦ 20 • written 4.1 years ago by sale1230200630
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