I had performed differential expression analysis on my illumina genarated microarray data.
I used algorithm illumina custom
What I believe , foe diffrential expresn analysis t test can be performed on two sample like control and test.
If I have multiple sample then I opt for illumina custom. Am I correct?
And can any explain me the principle of illumina custom algorithm
Another thing this gives output saying diff score. I read the FAQ of support ilumina where they state diff score is transformed value of pValue.
My question is where this p value they have got from and Which test they are using ( t test ANOVA etc.)
I don't think the Illumina support team is scanning for questions about Genome Studio on this website. I think you can better direct your questions directly to Illumina. Illumina is a billion dollar company, I think they'll have a super support team ready to answer your questions.
If not, you're always free to use freeware for your analysis, and many people will answer your questions regarding these freeware on this website!