Graphic Of Genomic Positions Of Protein Domains

Question

[Tonig]

I know the part of this questions was solved in Biostar here

http://biostar.stackexchange.com/questions/3589/genomic-positions-of-protein-domains http://biostar.stackexchange.com/questions/6709/easy-way-to-map-cds-coordinates-to-genomic-coordinates

http://biostar.stackexchange.com/questions/15925/mapping-protein-domains-to-exons

What I need is to get some kind of graphic like this

http://www.nature.com/ng/journal/vaop/ncurrent/images_article/ng.1027-F3.jpg

Showing the exons, the domains and the CLUSTALW. Ok, probably I have to combine the CLUSTALw output with the other two graphics, any idea how to do it? Basically how to get the exon graphic

Thanks in advance

[Christian]

You might also have a look here: http://www.biostars.org/post/show/16337/program-to-visualize-gene-models-with-highlighted-protein-features/

Answer 1

[Zev.Kronenberg]

TexShade will make nice alignments for these types of figures. Ultimately I think you will need to use illustrator or photoshop to combine the genomic plot and the alignment.