Question: Graphic Of Genomic Positions Of Protein Domains
1
gravatar for Tonig
8.7 years ago by
Tonig440
Tonig440 wrote:

I know the part of this questions was solved in Biostar here

http://biostar.stackexchange.com/questions/3589/genomic-positions-of-protein-domains http://biostar.stackexchange.com/questions/6709/easy-way-to-map-cds-coordinates-to-genomic-coordinates

http://biostar.stackexchange.com/questions/15925/mapping-protein-domains-to-exons

What I need is to get some kind of graphic like this

http://www.nature.com/ng/journal/vaop/ncurrent/images_article/ng.1027-F3.jpg

Showing the exons, the domains and the CLUSTALW. Ok, probably I have to combine the CLUSTALw output with the other two graphics, any idea how to do it? Basically how to get the exon graphic

Thanks in advance

ADD COMMENTlink modified 8.6 years ago by Zev.Kronenberg11k • written 8.7 years ago by Tonig440

You might also have a look here: http://www.biostars.org/post/show/16337/program-to-visualize-gene-models-with-highlighted-protein-features/

ADD REPLYlink written 8.4 years ago by Christian2.9k
2
gravatar for Zev.Kronenberg
8.7 years ago by
United States
Zev.Kronenberg11k wrote:

TexShade will make nice alignments for these types of figures. Ultimately I think you will need to use illustrator or photoshop to combine the genomic plot and the alignment.

ADD COMMENTlink written 8.7 years ago by Zev.Kronenberg11k
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