Question: Is this warning fatal in OMA
0
gravatar for moranr
23 months ago by
moranr230
Ireland
moranr230 wrote:

Hi, 

Running the second stage of oma.  I got a warning :

WARNING: An error occured during inference: Labels in species tree do not match with genome names: {Translated_Adineta_vaga_edited_cds} <--> {Translated_Adineta_Vaga_edited_cds}

Does this mean I should delete the output folder and the ortholog_milestone.drw.gz and restart the second stage after fixing the newick tree, or should I just fix, delete output and rerun ? 

Thanks, 

oma orthologs • 643 views
ADD COMMENTlink modified 23 months ago by adrian.altenhoff360 • written 23 months ago by moranr230
3
gravatar for adrian.altenhoff
23 months ago by
Switzerland
adrian.altenhoff360 wrote:

Hi,

you don't need to remove any cached files, just update the newick tree in the parameter file and restart oma.

Cheers

Adrian

ADD COMMENTlink written 23 months ago by adrian.altenhoff360

Great, thanks.

ADD REPLYlink written 23 months ago by moranr230
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