Question: Is this warning fatal in OMA
0
gravatar for moranr
4.0 years ago by
moranr260
Ireland
moranr260 wrote:

Hi,

Running the second stage of oma. I got a warning :

WARNING: An error occured during inference: Labels in species tree do not match with genome names: {Translated_Adineta_vaga_edited_cds} <--> {Translated_Adineta_Vaga_edited_cds}

Does this mean I should delete the output folder and the ortholog_milestone.drw.gz and restart the second stage after fixing the newick tree, or should I just fix, delete output and rerun?

Thanks,

oma orthologs • 1.1k views
ADD COMMENTlink modified 17 months ago by RamRS25k • written 4.0 years ago by moranr260
3
gravatar for adrian.altenhoff
4.0 years ago by
Switzerland
adrian.altenhoff630 wrote:

Hi,

You don't need to remove any cached files, just update the newick tree in the parameter file and restart oma.

Cheers

Adrian

ADD COMMENTlink modified 17 months ago by RamRS25k • written 4.0 years ago by adrian.altenhoff630

Great, thanks.

ADD REPLYlink written 4.0 years ago by moranr260
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