Question: Is this warning fatal in OMA
0
gravatar for moranr
3.0 years ago by
moranr250
Ireland
moranr250 wrote:

Hi,

Running the second stage of oma. I got a warning :

WARNING: An error occured during inference: Labels in species tree do not match with genome names: {Translated_Adineta_vaga_edited_cds} <--> {Translated_Adineta_Vaga_edited_cds}

Does this mean I should delete the output folder and the ortholog_milestone.drw.gz and restart the second stage after fixing the newick tree, or should I just fix, delete output and rerun?

Thanks,

oma orthologs • 908 views
ADD COMMENTlink modified 5 months ago by RamRS20k • written 3.0 years ago by moranr250
3
gravatar for adrian.altenhoff
3.0 years ago by
Switzerland
adrian.altenhoff450 wrote:

Hi,

You don't need to remove any cached files, just update the newick tree in the parameter file and restart oma.

Cheers

Adrian

ADD COMMENTlink modified 5 months ago by RamRS20k • written 3.0 years ago by adrian.altenhoff450

Great, thanks.

ADD REPLYlink written 3.0 years ago by moranr250
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1396 users visited in the last hour