Question: Is this warning fatal in OMA
0
gravatar for moranr
2.3 years ago by
moranr240
Ireland
moranr240 wrote:

Hi, 

Running the second stage of oma.  I got a warning :

WARNING: An error occured during inference: Labels in species tree do not match with genome names: {Translated_Adineta_vaga_edited_cds} <--> {Translated_Adineta_Vaga_edited_cds}

Does this mean I should delete the output folder and the ortholog_milestone.drw.gz and restart the second stage after fixing the newick tree, or should I just fix, delete output and rerun ? 

Thanks, 

oma orthologs • 760 views
ADD COMMENTlink modified 2.3 years ago by adrian.altenhoff380 • written 2.3 years ago by moranr240
3
gravatar for adrian.altenhoff
2.3 years ago by
Switzerland
adrian.altenhoff380 wrote:

Hi,

you don't need to remove any cached files, just update the newick tree in the parameter file and restart oma.

Cheers

Adrian

ADD COMMENTlink written 2.3 years ago by adrian.altenhoff380

Great, thanks.

ADD REPLYlink written 2.3 years ago by moranr240
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