Question: Is this warning fatal in OMA
0
gravatar for moranr
2.6 years ago by
moranr240
Ireland
moranr240 wrote:

Hi,

Running the second stage of oma. I got a warning :

WARNING: An error occured during inference: Labels in species tree do not match with genome names: {Translated_Adineta_vaga_edited_cds} <--> {Translated_Adineta_Vaga_edited_cds}

Does this mean I should delete the output folder and the ortholog_milestone.drw.gz and restart the second stage after fixing the newick tree, or should I just fix, delete output and rerun?

Thanks,

oma orthologs • 814 views
ADD COMMENTlink modified 4 days ago by Ram17k • written 2.6 years ago by moranr240
3
gravatar for adrian.altenhoff
2.6 years ago by
Switzerland
adrian.altenhoff400 wrote:

Hi,

You don't need to remove any cached files, just update the newick tree in the parameter file and restart oma.

Cheers

Adrian

ADD COMMENTlink modified 6 days ago by Ram17k • written 2.6 years ago by adrian.altenhoff400

Great, thanks.

ADD REPLYlink written 2.6 years ago by moranr240
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