#!/bin/bash #BSUB -n 8 #/share/pkg/bwa/0.7.12/bwa aln -t 16 -q 15 g1k_37.fasta 013_1.fastq.gz > 013_1.sai
For the bwa-aln, multi-threading is allowed; as in my script above, I request 8 cores, and set -t 16 to require 16 thread to run the program.
This run is successful, but raises my question, so this example shows each thread for bwa-aln won't occupy the whole core? Maybe say 0.2 or 0.5 core?
Also, if the requested core cannot run multi-thread, then what will happen? For example, only 10 threads are allowed, but I set 16 thread, then what will happen?