Tool: WINDOWS command line tool for sequence assembly
3
gravatar for BioApps
3.4 years ago by
BioApps740
Spain
BioApps740 wrote:

My company just released an update to a less know program called "DNA Baser Sequence Assembler Console" which is a "DOS" console tool. I know that most people on this forum are Linux-oriented, but I think this tool worth being brought to light just to show that bioinformatics can be done also on Windows.

I think it may be the only one for Windows :) At least Google could not find a second one.

So, take a look:

Windows command line sequence assembler

What can it do?

  • import Sanger samples (abi, scf, fasta, seq, txt, gbk) in the specified folder
  • automatically trim low quality ends
  • remove recognition sequences
  • assemble (also to reference)
  • correct the ambiguities in contig
  • save the log and the contig to disk

v1.3 - 2 match 2016
Download
Ready to pipe?

:)

ADD COMMENTlink modified 9 months ago by RamRS22k • written 3.4 years ago by BioApps740
2

You need to clarify that this tool is for conventional Sanger sequencing data.

Otherwise you are going to make a lot of windows users unhappy :-)

ADD REPLYlink modified 3.4 years ago • written 3.4 years ago by genomax69k

You are right. Done: "import Sanger samples (abi, scf, fasta, seq, txt, gbk) in the specified folder"

ADD REPLYlink modified 3.4 years ago • written 3.4 years ago by BioApps740
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