Meaning of alias in Sequence Read Archive
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8.2 years ago
shome ▴ 10

What is meaning of alias in the following link ? What does TCAG_Helsinki signify in the following link : http://sra.dnanexus.com/runs/SRR032763

RNA-Seq ncbi • 1.4k views
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8.2 years ago
mastal511 ★ 2.1k

According to NCBI's SRA Handbook, Submission Quick-Start Guide:

http://www.ncbi.nlm.nih.gov/books/NBK47529/

'Submission Alias and Comment

Alias – An ID used by submitters to track the submission of a set of Experiments and Runs. This field should be something that is used internally to refer to the project and makes sense to the submitter. Once saved, the Submission Alias cannot be changed. Like all Alias fields in SRA, this is not an indexed field and will not be visible to the public during normal usage of the database.'

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8.2 years ago
GenoMax 141k

In addition to the general explanation provided by @mastal511:

As far as I can tell that molecular_indexing_scheme is the name of the barcode "city (helsinki)" assigned to TCACCTC barcode used for this sample. See page 9 in this document: http://hmpdacc.org/doc/HMP_MDG_454_16S_Protocol.pdf

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