Question: Ref_seq DNA seq extraction
0
gravatar for amish
3.2 years ago by
amish0
India
amish0 wrote:

I have ref_seq proteins, i wanted its DNA sequence from NCBI how can it get using proteins ref_seq ids?

dna proteins ref_req ncbi • 823 views
ADD COMMENTlink modified 3.2 years ago by David Langenberger8.8k • written 3.2 years ago by amish0
0
gravatar for David Langenberger
3.2 years ago by
Deutschland
David Langenberger8.8k wrote:

Use the UCSC table browser to get the sequence for your ID(s).

  1. Select your species
  2. Choose group "genes" and track "RefSeq"
  3. Paste your list of IDs under "identifiers (names/accessions)"
  4. "output format" is "sequence"
ADD COMMENTlink modified 3.2 years ago • written 3.2 years ago by David Langenberger8.8k

Thanks for helping me . But i did'nt find option for plants at UCSC. I have plant refseq proteome data and i want DNA seq data of respective protein ids.

ADD REPLYlink written 3.2 years ago by amish0

That's because there are no plants in UCSC. :) Next time, try to be more precise with your question... that safes some time. With plants, I cannot help you. At least not in a simple way.

ADD REPLYlink written 3.2 years ago by David Langenberger8.8k
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