Question: Stringtie -> ballgown: What normalization should be done on FPKM values?
gravatar for njbernstein
4.1 years ago by
United States
njbernstein40 wrote:

Hi all,

I used stringtie to quantify an rna experiment and then loaded that data into ballgown. The standard unit used by ballgown is FPKM, as such I'm wondering what between sample normalization could or should be done on this data. I'm mostly interested in more rarely occurring transcripts.

Best, Nick

ballgow rna • 2.3k views
ADD COMMENTlink written 4.1 years ago by njbernstein40
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