Question: Software and algorithm for identification of tissue-specific express genes
0
gravatar for Shicheng Guo
3.0 years ago by
Shicheng Guo7.4k
Shicheng Guo7.4k wrote:

Hi All,

Is there any atlas for the software, package or algorithm to identify tissue-specific express genes?

For example: ROKU: a novel method for identification of tissue-specific genes.

Thanks.

ADD COMMENTlink modified 3.0 years ago by Charles Warden6.4k • written 3.0 years ago by Shicheng Guo7.4k
1
gravatar for venu
3.0 years ago by
venu6.0k
Germany
venu6.0k wrote:

Not packages but these are online tools

And you can explore Human Protein Atlas, RefExA

ADD COMMENTlink modified 3.0 years ago • written 3.0 years ago by venu6.0k
1
gravatar for Charles Warden
3.0 years ago by
Charles Warden6.4k
Duarte, CA
Charles Warden6.4k wrote:

In order for an algorithm to be useful, you would need a large dataset covering many different tissues. So, I would focus on databases designed to cover multiple tissues:

TiGER has an easy to use web interface: http://bioinfo.wilmer.jhu.edu/tiger/

Other than that, +1 for the recommendation to use the EMBL Expression Atlas (which includes RNA-Seq datasets like the Illumina Body Map)

ADD COMMENTlink written 3.0 years ago by Charles Warden6.4k
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