I have a list of gene names and I want to know the function of each gene.
I tried using the Biomart website but couldn't find a list with gene function. For instance, is it possible to get the CC, MF, and BP GO terms from that website?
A: Clustering Genes in a Genome based on GO Terms
A: focus on specific pathway
From Biomart, you can easily obtain the GO CC, MF and BP you are looking for:
Example : http://www.ensembl.org/biomart/martview/73fed257731b73cebf31e71a3e933b2d
edit : Optional point added as suggested by Emily_Ensembl
If you're not familiar with BioMart, you could take a look at the video tutorial.
You should also probably add in step 2B: filter by your list of gene names.
Here are two site1 site2.
You can try Enrichr, an online gene enrichment tool which features many databases.
Just copy&paste the list of gene symbols, and then select the enrichment dataset you prefer. In your case I would look at the pathways and ontologies.
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