I have a list of gene names and I want to know the function of each gene. I tried using the Biomart website but couldn't find a list with gene function. For instance, is it possible to get the CC, MF, and BP GO terms from that website?
I have a list of gene names and I want to know the function of each gene. I tried using the Biomart website but couldn't find a list with gene function. For instance, is it possible to get the CC, MF, and BP GO terms from that website?
From Biomart, you can easily obtain the GO CC, MF and BP you are looking for:
Example : http://www.ensembl.org/biomart/martview/73fed257731b73cebf31e71a3e933b2d
edit : Optional point added as suggested by Emily_Ensembl
If you're not familiar with BioMart, you could take a look at the video tutorial.
You can try Enrichr, an online gene enrichment tool which features many databases.
Just copy&paste the list of gene symbols, and then select the enrichment dataset you prefer. In your case I would look at the pathways and ontologies.
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A: Clustering Genes in a Genome based on GO Terms
A: focus on specific pathway