I’m looking for a data base of functional SNPs.
I’ve found F-SNP, which is very interesting for me, but it’s very old and I would like to obtain information for more SNPs.
I’ve read about other databases as Fast-SNP, but they aren’t working nowadays.
Do you know any other database of functional SNPs working nowadays? Or an easy way to obtain functional SNPs for a given gen?
I would like not only protein coding SNPs, the output of F-SNP is perfect for me and I’m looking for something similar. I’m interesting in SNPs affecting splicing sites, TF binding sites, phosphorylation sites…..
I’ve seen this post:
Tools For Predicting Functional Effects Of Snps?
but it’s 2.5 years old and perhaps there is something new.
Thank you very much.
Thanks for your answer. This db is quite interesting, but only covers SNP within the gene and I am also interested in upstream and downstream SNPs for a given gene.
I see. I don't know of a database. I believe CADD is one of the few tools that tries to predict SNP effect outside of gene regions. You might want to take a look there.