Hello,
I use fastq-dump in SRAToolkit to download raw data for RNA-seq analysis
My command line is: fastq-dump --split-files SRR1819888 & (I submit it to the background).
Then I always get error report from ncbi: ncbi_error_report.xml
Inside is :
</repository> <tools> <ascp> <max_rate>"1000m"</max_rate> </ascp> </tools> <vdb> <lib> <paths> <kfg>"/disk3/zhangjunhong/opt/SRA_Toolkit/bin"</kfg> </paths> </lib> </vdb> </config> <remoteaccess available="true"/> <currentprotectedrepository found="false"/> </configuration> <object path="SRR1557039" type="table" fs_type="unexpected"> </object> <software> <vdblibrary vers="2.7.8"/> <build static="f <Er <Error rc=" rc(rccont,rcnamelist,rcinserting,rcstring,rcempty)"="" function="VDBManagerListExternalSchemaModules"/> </build> <tool date="Dec 21 2015" name="fastq-dump" vers="2 <Bin <Binary path=" disk3="" zhangjunhong="" opt="" sra_toolkit="" bin="" fastq-dump"="" type="alias" md5="b8a9729b9fde6a7301467f7154db 40"> <alias resolved="fastq-dump.2"> <alias resolved="fastq-dump.2.5.7"/> </alias> </binary> </tool> </software> <env> </env> </report>
I have done homework and troubleshooting but still I have no ideal with this.
<object path="SRR1557039" type="table" fs_type="unexpected">
Do you have idea about this?