Question: TGCA data download in latest assembly
0
gravatar for Duarte Molha
4.6 years ago by
Duarte Molha230
Oxford, UK
Duarte Molha230 wrote:

Hi guys

I am interested in downloading data from the cancer genome atlas. All their data is available in MAF format and I will probably want to convert it to VCF.

However before doing this I was wondering if anyone knows if there is anywhere I can obtain the data aligned to the latest assembly and if not what is the best way to convert them myself? Liftover?

Many thanks

data alignment tgca assembly • 970 views
ADD COMMENTlink modified 4.6 years ago by Arnaud Ceol850 • written 4.6 years ago by Duarte Molha230
0
gravatar for Arnaud Ceol
4.6 years ago by
Arnaud Ceol850
Milan, Italy
Arnaud Ceol850 wrote:

I've used indeed LiftOver when I needed TCGA data updated to the latest assembly.

ADD COMMENTlink written 4.6 years ago by Arnaud Ceol850
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