Question: (Closed) Keep duplicate cuffdiff gene names when converting to AGI
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gravatar for A
4.7 years ago by
A3.9k
A3.9k wrote:

hi, in cuffdiff output i have 32394 genes for sample C1 and C2 but when i converted them to AGI in biomart i have only 20562 AGI because I saw some genes were repeated in cuffdiff output between sample C1 and C2. then how I can have 32394 AGI???? because it is too difficult even i don't know how to match these IDs...

blast rna-seq • 1.1k views
ADD COMMENTlink modified 4.7 years ago by John12k • written 4.7 years ago by A3.9k
1

Hello Fereshteh!

We believe that this post does not fit the main topic of this site.

Closed until OP edits title text.

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD REPLYlink written 4.7 years ago by RamRS30k

I think Fereshteh is trying, and I can understand the question. Gene names got converted, and in the process whatever converted them only returns unique values. She wants to convert them but keep duplicates.

But I agree, some more thought needs to be put into the title and the post itself. Can you provide a snippit of the input and output data so we can see what you're dealing with Fereshteh? I will fix the title and reopen the post, but please in the future help us help you by providing some more info when you ask a question :)

ADD REPLYlink modified 4.7 years ago • written 4.7 years ago by John12k
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John, OP asked this question here as well: getting annotation for a list of genes

I helped her out, and I closed this because OP needs to learn. We have tried explaining in a multitude of ways.

ADD REPLYlink written 4.7 years ago by RamRS30k

Hello Fereshteh!

Questions similar to yours can already be found at:

We have closed your question to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.

Cheers!

PS: You asked the same question within two hours!? Why would anyone do that..
ADD REPLYlink written 4.7 years ago by John12k

A few years back, I developed a habit that I rarely use now - one browser window per thought process. I'd start solving a problem, and a browser window with Google + a bunch of other resources on the initial step would start spawning new windows as I found sub-parts of the problem. Like recursion, only human.

What I did with Google, OP seems to be doing with Biostars. This is not the first time this has happened.

ADD REPLYlink written 4.7 years ago by RamRS30k
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