Question: Identifying Groups Of Transcription Factors
2
gravatar for Diana
7.7 years ago by
Diana800
Germany
Diana800 wrote:

Hi everyone,

I have used a couple of techniques to identify enriched transcription factor binding sites in my sequences of interest. I'm looking for something that would tell me if a group of TFs always co-regulate my sequences. Is there any technique out there to accomplish that?

Thanks a lot!!

enrichment • 1.4k views
ADD COMMENTlink written 7.7 years ago by Diana800

you say 'my sequences' what are your sequences (chip-seq data? genes of interest?)

ADD REPLYlink written 7.7 years ago by Ying W3.9k

These are 7 genes that are expressed in the same tissue. We want to find out if there's a group of TFs that bind to all these genes.

ADD REPLYlink written 7.7 years ago by Diana800
1
gravatar for Yibm
7.7 years ago by
Yibm10
Yibm10 wrote:

I recommend you to use: RSA tools http://rsat.ulb.ac.be/, there are tutorials and papers where you can understand how to use it, it is very easy!

Regards,

ADD COMMENTlink written 7.7 years ago by Yibm10
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