Question: How to run RepeatMasker only with my own library?
0
gravatar for loczi94
4.9 years ago by
loczi940
loczi940 wrote:

Hello everybody!

I would like to run RepeatMasker only with my custom library (which I've made using RepeatModeler) excluding basics ones, but if I use -lib option RepeatMasker uses the full RepeatMasker library plus the library I specify. Is it possible to use ONLY my own library? If it is, how can I do this

Thanks for replies in advance ! :)

library repeatmasker • 2.0k views
ADD COMMENTlink modified 13 months ago by bioinfo0 • written 4.9 years ago by loczi940
0
gravatar for bioinfo
13 months ago by
bioinfo0
bioinfo0 wrote:

when you use -lib flag Repeatmasker read only the custom library

ADD COMMENTlink written 13 months ago by bioinfo0

That is not what OP is reporting. Are you sure about that? Any reference?

ADD REPLYlink written 13 months ago by ATpoint44k

I have been using this tool quite sometimes, I believe if I used -lib flag repeat masker will read only from it. that's why we are able to use either - Species-specific or -lib flag

ADD REPLYlink written 13 months ago by bioinfo0
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