Question: AMOVA on SNP data
0
gravatar for cll92
3.1 years ago by
cll920
cll920 wrote:

Hi,

I have a dataset with snp genotypes (in PLINK format) of individuals of different populations and I would like to perform an AMOVA. I've seen that there is an R package called pegas that provides a function to that:

On the manual it says that I need to provide a model that consists on a distance matrix followed by the stratifications to test. My question is which distance matrix do I need to provide and how can I compute it.

Thanks.

snp • 1.4k views
ADD COMMENTlink modified 3.1 years ago by Biostar ♦♦ 20 • written 3.1 years ago by cll920
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 920 users visited in the last hour