Question: AMOVA on SNP data
gravatar for cll92
4.0 years ago by
cll920 wrote:


I have a dataset with snp genotypes (in PLINK format) of individuals of different populations and I would like to perform an AMOVA. I've seen that there is an R package called pegas that provides a function to that:

On the manual it says that I need to provide a model that consists on a distance matrix followed by the stratifications to test. My question is which distance matrix do I need to provide and how can I compute it.


snp • 1.6k views
ADD COMMENTlink modified 3.9 years ago by Biostar ♦♦ 20 • written 4.0 years ago by cll920
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