Question: Detecting structural variants when comparing assembled genome and reference
gravatar for godeludanu
4.4 years ago by
godeludanu30 wrote:

I have a bacterial genome which has been assembled de novo from nanopore reads. I wish to compare this with a reference to detect all structural variants (this is an exploratory study, we do not currently have specific variations in mind).

Is there a single pipeline / tool to achieve what I am looking for?

genome • 1.4k views
ADD COMMENTlink modified 2.8 years ago by Biostar ♦♦ 20 • written 4.4 years ago by godeludanu30
gravatar for skbrimer
4.4 years ago by
United States
skbrimer640 wrote:

You might try Sybil I have not used it without someone holding my hand in a training seesion, but it had a really cool synteny gradient view that would should rearrangements pretty easily.

ADD COMMENTlink written 4.4 years ago by skbrimer640
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