Question: Do I need to use hg19 or hg38 reference for performing variant calling analysis and RNAseq analysis?
3.0 years ago by
mastal511 • 2.0k
You will save yourself a lot of hassle by downloading the genome from GATK, otherwise you will keep getting errors because the chromosomes are not ordered in 'karyotypic' order the way GATK uses them.
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