Question: Kaplan Meier Hazard Ratio
0
gravatar for Apricimo
3.9 years ago by
Apricimo0
United States
Apricimo0 wrote:

I need to find the highest hazard ratio for a particular cancer for a particular gene.

For example, I want to find out which gene in the human genome corresponds to the poorest clinical outcome for lung cancer.

I've used cBioportal but using this databse I need to enter a specific gene and then I can see the Kaplan Meier plot from which I can see what the hazard ratio is. I don't want to sit here and enter gene names then look through them one by one. Rather how do I filter so that I am able to see only the highest hazard ratios and pick out those genes.

Is there a database for this or how could I find out this information?

ADD COMMENTlink modified 14 months ago by asalimih20 • written 3.9 years ago by Apricimo0
0
gravatar for asalimih
14 months ago by
asalimih20
asalimih20 wrote:

You can use TCGABiolinks package for this purpose. here is a good article about it link

ADD COMMENTlink modified 14 months ago • written 14 months ago by asalimih20
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