I can map all the RNA-seq reads on the chromosome, but after cufflinks process, most of the FPKM values are zero. for example, there is gene fragments mapped on chromosome 11 using IGV software, but after cufflinks, the FPKM values for all the genes are zero. Any can help explain what's wrong with it. Many thanks.
Question: 80% of FPKM values are zero after cufflinks
3.1 years ago by
haipingl • 10
haipingl • 10 wrote:
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