Retrieve RNA-protein binding sites from CLIP-Seq
1
0
Entering edit mode
5.7 years ago
camelbbs ▴ 680

Hi all,

We want to map the possbile RNA-protein binding (RBP) sites to our predicted transcripts. And after reading literature, we find some works extracting RNA-protein binding sites from Clip-seq data. We want to ask if there is a collection of RBP sites from CLIP-seq in some databases? And if the public RBP sites are collected from cell lines, but our transcripts are detected in tissues, does the sites can be applied in our work?

Thanks a lot, Camel

clip-seq rna protein binding • 1.3k views
ADD COMMENT
1
Entering edit mode
5.7 years ago
lsp03yjh ▴ 810

you can use starbase database, it provide all RBP binding sites for download ( http://starbase.sysu.edu.cn/download.php ).

ADD COMMENT

Login before adding your answer.

Traffic: 2629 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6