Question: genome bacterial data
0
gravatar for mittu1602
3.3 years ago by
mittu1602150
India
mittu1602150 wrote:

I have a list of assembly ids of bacterial genome data, I want to extract the following type of data:

  1. Number of chromosomes
  2. Number of plasmids
  3. Total number of proteins
  4. Chromosome size

How can I extract the information?

Thank you

ncbi assembly genome • 873 views
ADD COMMENTlink modified 3.3 years ago • written 3.3 years ago by mittu1602150
0
gravatar for 5heikki
3.3 years ago by
5heikki8.4k
Finland
5heikki8.4k wrote:

You can do probably all of that with Entrez Direct.

For example: epost -db assembly -id 39768 | elink -target genome | efetch -format docsum | xtract.pl -element Number_of_Plasmids
7

ADD COMMENTlink modified 3.3 years ago • written 3.3 years ago by 5heikki8.4k
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