genome bacterial data
I have a list of assembly ids of bacterial genome data, I want to extract the following type of data:
- Number of chromosomes
- Number of plasmids
- Total number of proteins
- Chromosome size
How can I extract the information?
You can do probably all of that with Entrez Direct.
epost -db assembly -id 39768 | elink -target genome | efetch -format docsum | xtract.pl -element Number_of_Plasmids
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