Conversion of VCF file to Vranges
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8.3 years ago

I am using SomaticSignature Package for analysis of TCGA data. I have VCF file and need to convert it in vranges. How can I do this conversion.

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8.2 years ago
spaladug ▴ 10

The following code should do it:

 vcf <- readVcf(x, genome = genome)
 vr <- as(vcf, "VRanges")
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