Question: Conversion of VCF file to Vranges
0
gravatar for Ishtiaq Ahmad Khan
3.7 years ago by
Pakistan
Ishtiaq Ahmad Khan50 wrote:

I am using SomaticSignature Package for analysis of TCGA data. I have VCF file and need to convert it in vranges. How can I do this conversion.

R • 1.8k views
ADD COMMENTlink modified 3.7 years ago by spaladug10 • written 3.7 years ago by Ishtiaq Ahmad Khan50
0
gravatar for spaladug
3.7 years ago by
spaladug10
United States
spaladug10 wrote:

The following code should do it:

 vcf <- readVcf(x, genome = genome)
 vr <- as(vcf, "VRanges")
ADD COMMENTlink written 3.7 years ago by spaladug10
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