Entering edit mode
8.1 years ago
frenchmytoast112
▴
10
Hello,
can there be such file that combines GCF string with the accession number of a given genome, so that these two values can be mapped to each other?
We were just discussing that in this thread. Batch download assemblies based on accesion number with shell script
If you know the species name then see an alternate option I mentioned there.
I was inspired by this question. It seem there are a lot of gaps in the NCBI databases that do not connect data to each other.
This is a new development (GCF#'s, if I recall) and the right file probably has not been produced (or if it is there someone like us has not found it yet). It may be possible to devise a clever e-utils solutions to get this info as well.