I was trying to use canu assembler for pacbio read.In test case-1 I have used 3Gb data (not used HPC) and all the process, correction ,trimming & assembly, has finished in three days.When I used 30Gb data in HPC machine with SLURM , assembly process got failed after two days of run. Looking for advise from someone,who has canu experience in HPC with SLURM.
Following commands used for canu correction
srun canu -p datepalm -d correct_file -correct genomeSize=650m -pacbio-raw first_30gb.fasta
Log file report is showing as : gatekeeperCreate finished successfully.
really appreciate your valuable suggestion.