Question: How to extract the loci that has more than 2 alleles in PLINK dataset?
0
gravatar for leileicui_xuan
3.1 years ago by
leileicui_xuan0 wrote:

Sometimes when I generated a PLINK dataset by myself, the dataset will usually contains many loci that has >2 alleles and I wonder is there some commands in PLINK could check and extract out these bad loci? Many thanks!

ERROR: Locus SNP7 has >2 alleles: individual MAGIC MAGIC.101 has genotype [ A T ] but we've already seen [ A ] and [ G ]

plink • 988 views
ADD COMMENTlink written 3.1 years ago by leileicui_xuan0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1062 users visited in the last hour