Question: Bismark: Minimum MAPQ threshold (MMT) and Minimum Phred threshold (MPT)
gravatar for Shicheng Guo
3.6 years ago by
Shicheng Guo7.8k
Shicheng Guo7.8k wrote:

Hi All,

Just a simple question. Can we set Minimum MAPQ threshold to the mapping reads and Minimum Phred threshold of base in the bismark_methylation_extractor function in bismark?

I didn't find it in the lastest bismark v0.15.2. I just want to make sure they are not included in bismark_methylation_extractor or I didn't find it.


bismark • 912 views
ADD COMMENTlink written 3.6 years ago by Shicheng Guo7.8k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 678 users visited in the last hour