Question: Bismark: Minimum MAPQ threshold (MMT) and Minimum Phred threshold (MPT)
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gravatar for Shicheng Guo
4.3 years ago by
Shicheng Guo8.3k
Shicheng Guo8.3k wrote:

Hi All,

Just a simple question. Can we set Minimum MAPQ threshold to the mapping reads and Minimum Phred threshold of base in the bismark_methylation_extractor function in bismark?

I didn't find it in the lastest bismark v0.15.2. I just want to make sure they are not included in bismark_methylation_extractor or I didn't find it.

Thanks.

bismark • 1.0k views
ADD COMMENTlink written 4.3 years ago by Shicheng Guo8.3k
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