Bismark: Minimum MAPQ threshold (MMT) and Minimum Phred threshold (MPT)
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6.2 years ago
Shicheng Guo ★ 9.0k

Hi All,

Just a simple question. Can we set Minimum MAPQ threshold to the mapping reads and Minimum Phred threshold of base in the bismark_methylation_extractor function in bismark?

I didn't find it in the lastest bismark v0.15.2. I just want to make sure they are not included in bismark_methylation_extractor or I didn't find it.

Thanks.

bismark • 1.5k views
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