I am trying to use BreakDancer tool for detecting structural variants.I downloaded BreakDancer from http://gmt.genome.wustl.edu/packages/breakdancer/install.html
I did the installation steps mentioned on the page completely.After this I went to the Documentation section to read about running BreakDancer.It said to use the command /usr/lib/breakdancer-max/bam2cfg.pl -g -h NA19238_chr21_del_inv.bam NA19238_chr21_del_inv.bam > BRC6.cfg. But it gave an error saying:/usr/lib/breakdancer-max/bam2cfg.pl So I searched and there was no Breakdancer installed there.So I went to the folder where I had installed it and tried searching bam2cfg.pl but count not find it unless I finally found it in perl folder.Then I tried running the following command: sudo ./bam2cfg.pl -g -h NA19238_chr21_del_inv.bam NA19238_chr21_del_inv.bam > BRC6.cfg
I got error: Can't locate Statistics/Descriptive.pm in @INC (you may need to install the Statistics::Descriptive module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.20.2 /usr/local/share/perl/5.20.2 /usr/lib/x86_64-linux-gnu/perl5/5.20 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.20 /usr/share/perl/5.20 /usr/local/lib/site_perl .) at ./bam2cfg.pl line 7. BEGIN failed--compilation aborted at ./bam2cfg.pl line 7.
Whats wrong please help