Entering edit mode
8.1 years ago
am.sim.2014
•
0
background: -running on linux 14.04
-using nr database for proteins
-the chain_A from 1B72, that has been separated based the chain identifier
i'm sure I download blast and the database properly since
psiblast -subject chain_A.fasta -in_msa chain_A.fasta -out_ascii_pssm chain_A.pssm
actually returns a txt file, but when I try to do
psiblast -query chain_A.fasta -db nr -out_ascii_pssm chain_A.pssm
the terminal just halts and gives no output, not even errors I don't know what to do at this point
