Question: psiblast query no output and no error
0
gravatar for am.sim.2014
4.4 years ago by
am.sim.20140 wrote:

background: -running on linux 14.04

-using nr database for proteins

-the chain_A from 1B72, that has been separated based the chain identifier

i'm sure I download blast and the database properly since

psiblast -subject chain_A.fasta -in_msa chain_A.fasta -out_ascii_pssm chain_A.pssm

actually returns a txt file, but when I try to do

psiblast -query chain_A.fasta -db nr -out_ascii_pssm chain_A.pssm

the terminal just halts and gives no output, not even errors I don't know what to do at this point

blast • 972 views
ADD COMMENTlink modified 4.3 years ago by Biostar ♦♦ 20 • written 4.4 years ago by am.sim.20140
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