Question: How filter CNVs pathogenic
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gravatar for dl.nunez10
3.2 years ago by
dl.nunez100
dl.nunez100 wrote:

Hi Everyone.

I am a new member of this community.

I want to compare CNVs from 15 samples against some database as decipher, chop....

I analyzed my cel files by PennCNV, and I scan this rawcnv file with a refgene from UCSC; however, currently which I want to do is select CNVs associated to pathogenic processses. Because of I dont have control samples yet, I think that the best way is to compare my CNVs file with some database. I tried to download a bed file from CHOP, ISCA... and develop an scan by PennCNV, but could not develop this task.

Can you tell me, how can I filter my CNVs? What is the workflow that you use to select pathogenic CNVs in a quick way?

Thank you

next-gen genome • 855 views
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