I am a new member of this community.
I want to compare CNVs from 15 samples against some database as decipher, chop....
I analyzed my cel files by PennCNV, and I scan this rawcnv file with a refgene from UCSC; however, currently which I want to do is select CNVs associated to pathogenic processses. Because of I dont have control samples yet, I think that the best way is to compare my CNVs file with some database. I tried to download a bed file from CHOP, ISCA... and develop an scan by PennCNV, but could not develop this task.
Can you tell me, how can I filter my CNVs? What is the workflow that you use to select pathogenic CNVs in a quick way?