Question: Retrieve Gene Annotations using BSgenome
1
gravatar for bioinfc37
4.6 years ago by
bioinfc3730
bioinfc3730 wrote:

I have a matrix that consists of gene names. What is the most efficient method to retrieve the gene annotations using the BSgenome.Rnorvegicus.UCSC.rn5 package.

Example of matrix:

Oxtr
Ebf2
Ppp1r1a
Kcnc3

Thanks in advance

R • 908 views
ADD COMMENTlink modified 4.6 years ago by mastal5112.0k • written 4.6 years ago by bioinfc3730
0
gravatar for mastal511
4.6 years ago by
mastal5112.0k
mastal5112.0k wrote:

Have a look at the Bioconductor AnnotationDbi package documentation, and a couple of the vignettes - Introduction to Bioconductor Annotation Packages, and the Reference Manual.

https://bioconductor.org/packages/release/bioc/html/AnnotationDbi.html

ADD COMMENTlink written 4.6 years ago by mastal5112.0k
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