I am trying to use SICER on my H3K27me3 data. has anybody experience with this software? does it use the fastq files for mapping?
I had a look at the manual but I did not get how I should run it ? what this means "raw data need to be in the BED"?
may be I am asking too much, but, could you please share your script for running SICER for H3K27me3?
Thank you for your help