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• Meaning of "Cannot allocate [number] character vector" in Mafft
  Quick and simple question; I am trying to align 11 very long sequences in Mafft 7.304 for Windows...
• Problem running MAFFT
  I'm trying to run MAFFT for aligning sequences in .fasta format. I'm working on Ubuntu and using ...
• MAFFT error: Allocation error in load1SeqWithoutName_realloc
  Hi, I was trying to align several sequences with MAFFT 7.271: mafft --globalpair --maxiterate ...
• Problem with MAFFT Multiple Sequence Alignment
  Hi guys, I ran MSA with MAFFT (FFT-NS-i method with two cycles) in my university server, which ha...
• Mafft : FFT-INS-2 (Not tested.)
  Hello guys. I would like to insert sequences in an existing alignment with the software 'MAFFT'....
• MAFFT alignment error when running nextstrain snakemake file
  I get an error while aligning sequences using the nextstrain snakemake file It simply says: ...
• Multiple Sequence Alignment
  Hello How can I calculate the MAFFT output alignment score? I used the standalone version and th...
• Mafft 7.0 "Allocation error"
  Hi everyone! I was trying to align 12S sequences into Mafft and I got this error message, while t...
• Two questions about the MAFFT alignment tool.
  Two questions about MAFFT. (a) Suppose I have an unaligned nucleotide multi-fasta file A, with n...
• Command line to add algorithm option for MAFFT using GUIDANCE2
  Hello, I am using guidance 2 with MAFFT to create alignments of thousand of genes. I am working ...
• Limiting memory usage aligner MAFFT uses
  Hello all! I'm using MAFFT to do a L-INS-i alignment of about 35,000 sequences. I'm running MAFFT...
• MafftCommandline error, doesn't recognize mafft as an internal or external command
  Hello I am new to python and biopython, but I thought I had the code just about right but I am ge...
• MAFFT 'hat2 is wrong' error
  Hey all, I am aligning merged amplicon reads (around 280-300 bp) to an initial alignment of a m...
• Multiple sequence alignment on multiple very long sequences
  Hi all, I have a question regarding multiple sequence alignment. My aim is to take the entire ...
• creating an MSA file for 20+ million reads whith non-directional sequences
  Hi, I am trying to align about 20,000,000 reads that have been sequenced in a non-directional way...
• Forced alignment of multiple proteins against a reference?
  Hi,  I'm interested in aligning a population of related protein sequences against a canonical re...
• cuda-accelerated sequence alignment program
  Dear all, I want to do protein sequence alignment with a very large dataset which contains over ...
• MAFFT Alignment Algorithm
  Hello, How trustworthy are the fast MAFFT algorithms (Progressive Methods)? I like using G-INS-i...