Question: Coverage of methylated Cs
gravatar for ahsan.raza.rana
4.6 years ago by
ahsan.raza.rana40 wrote:

I have Bisulfite sequence files.I have mapped them using bismark and the resultant bedGraph file shows the chr, start, end, percent methylationl. Foe each location /Entry/methylated C ,I need total coverage.I dont know how to get the total coverage. I also generated a file by command coverage2cytosine but the output was chr , position, strand, count of methylated,count of unmethylated Can I calculate the coverage by adding count of methylated and unmethylated . If I am right please let me know. Seeking for immediate help.

software error • 1.6k views
ADD COMMENTlink modified 4.6 years ago by igor11k • written 4.6 years ago by ahsan.raza.rana40
gravatar for igor
4.6 years ago by
United States
igor11k wrote:

If you are running coverage2cytosine, you are giving it coverage report. The coverage report has the coverage.

ADD COMMENTlink written 4.6 years ago by igor11k
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