Variant Calling Workflow by Python?

Question

[mhmtgenc85]

Does anybody have a workflow of variant calling done by Python? I am new to bioinformatics and python so thank you.

[Matt Shirley]

I think you might need to clarify your question. Do you want a variant caller written in Python (platypus?) or maybe some examples of a Python workflow using something like Snakemake? If you're new to both bioinformatics and python it is perhaps more important to define your task clearly and tell us what your goals are so we can help.

[mhmtgenc85]

I have NGS data files and I would like to have VCF by using them via Python. And I dont really have any idea how snakemake works and right now I am trying to figure that out :)