RNA-Seq Genome mapping visualization?
1
1
Entering edit mode
8.0 years ago
qingxiangg ▴ 40

enter image description here

Hi, I wonder what software or R package can visualised RNA-seq reads:Genome mapping dataset like this image?

R • 1.8k views
ADD COMMENT
2
Entering edit mode
8.0 years ago
h.mon 35k

Pretty and (or should I say but?) uninformative. Bar charts will do a better job of conveying information here.

edit: sorry, I forgot about your question. See ggplot coord_polar.

ADD COMMENT
0
Entering edit mode

Thanks a lot mon! Muhahahah I like this comment, informative is definitely important.

I'll try coord_polar.

Thanks again!

ADD REPLY
0
Entering edit mode

If the plot is meant to show the percentages of the different categories, in my opinion it pretty informative. I would rearrange the legend though... (starting with total, total mapped, etc.).

ADD REPLY
0
Entering edit mode

Thanks for your suggestion!

ADD REPLY
0
Entering edit mode

Moved as an answer, I do not like seeing posts which look answered though the answer is hiding in comments. This increases the overall Biostars stats as well and I do this regularly. Hope its ok!

ADD REPLY
0
Entering edit mode

It is fine by me, I just didn't feel my answer was detailed enough so seemed more appropriate as a comment.

ADD REPLY

Login before adding your answer.

Traffic: 2594 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6