Question: download full genebank format sequences from NCBI
0
gravatar for hdy
4.3 years ago by
hdy120
United States
hdy120 wrote:

How to download gb files that contains the sequences as well? Tried the Genbank and Genbank (full) in NCBI, but both downloaded files stopped at "ORIGIN//" and no further sequences attach below.

ncbi • 1.3k views
ADD COMMENTlink modified 4.3 years ago by dago2.6k • written 4.3 years ago by hdy120

Are you trying to download an accession that is for a chromosome? Can you include an example?

ADD REPLYlink written 4.3 years ago by genomax87k

for example: http://www.ncbi.nlm.nih.gov/nuccore/BA000007.2

The last line of the downloaded genbank seqeunce file is "ORIGIN", but the complete genbank file should have sequences behind it.

The genbank format: http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html. It mentioned that "The ORIGIN may be left blank". I am wondering if I can get a "full" genbank file with the ORIGIN's have the actual sequences.

ADD REPLYlink modified 4.3 years ago • written 4.3 years ago by hdy120
1

Under "Customize view" to the top right, under "Display options" click on "Show Sequence". Then you will get full sequence.

ADD REPLYlink modified 4.3 years ago • written 4.3 years ago by genomax87k

That helps! Thank you!

ADD REPLYlink written 4.3 years ago by hdy120
1
gravatar for dago
4.3 years ago by
dago2.6k
Germany
dago2.6k wrote:

On the right side in the window "Customize view", you need to select "show sequences"

ADD COMMENTlink written 4.3 years ago by dago2.6k
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