Question: Software to run genetic association analysis between a phenotype and SNPs, conditional on the top SNP
gravatar for User 7754
3.2 years ago by
User 7754230
United Kingdom
User 7754230 wrote:

Dear experts,

I was wondering whether there are any packages available to automatically run conditional analysis, meaning association of a trait and variants in a region (y ~ SNPs), conditional on the best variant from the primary analysis (y ~ SNPs + top SNP). If there are not, I will proceed from scratch, but if there is any R package or other software to do this automatically from a phenotype and a dosage file with genotypes, vcf or Plink or other any other formats, that would be fantastic! Thank you

ADD COMMENTlink modified 3.2 years ago • written 3.2 years ago by User 7754230
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