Question: Testing sequence data for selection - one species and several populations
0
gravatar for hjaltemrm
4.0 years ago by
hjaltemrm0
hjaltemrm0 wrote:

Hello!

I have sequence data for a set of immune genes from several individuals from several populations. I would like to test for patterns of selection within each gene.

Is there a way to do this?

I was thinking of running tests in FUBAR and MEME, but I am unsure if I need to include outgroup(s) in these tests?

Is it possible to take an alignment of e.g. 10 sequences (I know this is a low sample size, but it is what I have) for each of three populations for a given gene and run selection tests on this?

Thank you very much for any advice! Hjalte

dna selection meme fubar • 941 views
ADD COMMENTlink written 4.0 years ago by hjaltemrm0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1713 users visited in the last hour