Question: Simple question: obtaining GO terminology utilizing NCBI GI's
0
gravatar for Biogeek
2.9 years ago by
Biogeek340
Biogeek340 wrote:

Guys,

Simple question to many of you, but I have made a specific nr_viridiplantae database for blastx using the nr database and dbaliastool on ncbi+.

What files can I use in order to get GO classifications using the sequence GI's of my best blast hits for each sequence.Also what unix command would be useful for this? I'm assuming a grep option?

New to syntax and although I'm learning, I have in my sites to master GO classification in the next day or two.So any direction or help is greatly appreciated!

Thanks!

go annotation ncbi • 802 views
ADD COMMENTlink modified 2.9 years ago • written 2.9 years ago by Biogeek340
0
gravatar for abascalfederico
2.9 years ago by
abascalfederico1.1k
Spain
abascalfederico1.1k wrote:

Not exactly what you requested but this may help: https://www.blast2go.com

ADD COMMENTlink written 2.9 years ago by abascalfederico1.1k
0
gravatar for Biogeek
2.9 years ago by
Biogeek340
Biogeek340 wrote:

Takes too long compared to a server set-up..

ADD COMMENTlink written 2.9 years ago by Biogeek340
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1316 users visited in the last hour