Question: What software was used to produce Figure 1 of this manuscript
1
gravatar for Vincent Laufer
3.0 years ago by
Vincent Laufer1.0k
United States
Vincent Laufer1.0k wrote:

From pubmed:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4573268/figure/fig1/

If I can figure out the software, I should be able to do the rest on my own. What I really like is overlaying the LD matrix with the association p-value vs chromosomal position plot. Therefore, I would also be interested in other packages that do this.

Lastly, if anyone has code to do this, I would be very thankful, but my first priority is just to find software options.

Edit: searching on my own revealed snp.plotter R package as the likely source of this, can anyone confirm that? Another package that might work for me is the locuszoom standalone. Are there other options I should know about?

ADD COMMENTlink modified 3.0 years ago • written 3.0 years ago by Vincent Laufer1.0k
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