Question: format of data for enrichr
0
gravatar for F
3.0 years ago by
F3.4k
Iran
F3.4k wrote:

hi, sorry how know the format of datasets i can use as input for Enrichr? I tried Arabidopsis _at, gene symbol, entrez, AGI but no result

thank you I found that the proper gene symbol will work but I noticed the results is for human, then does not work Enrichr for plants?

gene • 1.0k views
ADD COMMENTlink modified 3.0 years ago by EagleEye6.2k • written 3.0 years ago by F3.4k
2
gravatar for Maxim Kuleshov
3.0 years ago by
US, New York, Icahn School of Medicine at Mount Sinai
Maxim Kuleshov20 wrote:

You should use newline separated list of Entrez symbols. We don't have datasets for Arabidopsis. But you could convert your genenames to Entrez format using Ensamble. Or you could use homologus genes (but I'm not sure does it make sense). Also you could report a problem - there's a tiny label in a bottom left corner of Enrichr's page.

ADD COMMENTlink written 3.0 years ago by Maxim Kuleshov20
1
gravatar for EagleEye
3.0 years ago by
EagleEye6.2k
Sweden
EagleEye6.2k wrote:

You can also give it a try with GeneSCF

http://genescf.kandurilab.org

ADD COMMENTlink written 3.0 years ago by EagleEye6.2k

thank you, do you know please similar tool for windows?

ADD REPLYlink written 3.0 years ago by F3.4k
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