Hi! i have 2 files with paied reads (forward and reversed) and i'm wanting to trimm adapters from these reads.
the problem is in fastqc tool - i'm seeing in its output, that forward reads have problems on both adapter content and overrepresented sequences (which provides me an actual secuence of adapter). Thr adaptor here is GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGC
but on the reversed reads, fastqc says that there are adapters (at the end of reads) but no overrepresented sequences, hence i don't have a sequence to trimm.
is there a way to define this reversed adapter?