I would like to get the position in cM for a set of SNPs (SNPs from 1000Genomes Project). What I have is:
- list of SNPs with their physical position
- Genotype (or infered genotype) for each SNP for around 50 individuals
Some of these snps (around 25%) are among the HapMap II SNPs used to compute the genetic map available on HapMap webpage (http://ftp.hapmap.org/recombination/2008-03_rel22_B36/rates). But is it enough information to calculate the cM position for 1000genomes SNPs from HapMap II genetic map?
What do you suggest?
Thanks for your help.
Yours truly Pierre