Hi all,
Does anybody know a tool to display the codon changes caused by a specific list of snv's. I am not interesting for the amino acid changes.
I want something like that for instance: chr7 12771690 G A exonic Zscan18 ---------> TGC>TAC
Thanks in advance!
Where can one find that tool? Or does one just replace gene names in the example links you have posted?
Looks like that is it. Use your gene name in
http://i-pv.org/HGNC_NAME.html
Dear,
I did not create a database for all the genes. Some people want to use it for a specific set of variations, or some people use their VCF files. I used the Biomart variation database. So, eventually you will need to generate your own graph. I posted the tutorials on the webpage. You will need your mRNA, protein sequence in fasta format and your variation file. If you are interested in a certain gene, let me know. I'll generate it and put it online.