Question: merlin output error
gravatar for User6891
3.0 years ago by
User6891250 wrote:

Hi all,

I’m running Merlin on human SNParray data using the following command:

/home/tools/merlin/merlin-1.1.2/merlin -d familystructureexp1.dat,exp1.dat -p familystructureexp1.ped,exp1.ped -m --pairs --npl /home/tools/linkage_iscan/20160418_output_merlin/npl_exp1.txt

the tool is running until a certain point on chromosome 8

Analysing Chromosome 8 Family: 1 - Founders: 6 - Descendants: 10 - Bits: 13 Skipping Marker rs12678174 [BAD INHERITANCE] Skipping Marker rs10503424 [BAD INHERITANCE] Skipping Marker rs11783712 [BAD INHERITANCE] Skipping Marker rs7000539 [BAD INHERITANCE] Skipping Marker rs1907549 [BAD INHERITANCE] Skipping Marker rs279955 [BAD INHERITANCE] Skipping Marker rs2447175 [BAD INHERITANCE] Skipping Marker rs6996149 [BAD INHERITANCE] Skipping Marker rs3829210 [BAD INHERITANCE] merlin: ./libsrc/MathVector.h:73: double& Vector::operator: Assertion `n < dim' failed. MERLIN HAS CRASHED The operating system has decided to terminate Merlin, probably due to a memory access problem. If you set a memory usage limit (--megabytes:9999), Merlin may be able to recover gracefully from out of memory errors. You can reduce Merlin's memory requirements with the --swap option, which uses some of your free disk space as memory. The --smallSwap option uses even less memory and disk space. Alternatively, you could try a --singlepoint analysis, or use one of the options --zero, --one, --two, --three, to find an approximate solution if you are analysing a dense map.

I’ve tried the —megabytes:9999, —swap & —smallSwap option, but I always get the same error.

Did someone encounter the same problem?

merlin • 1.1k views
ADD COMMENTlink modified 3.0 years ago • written 3.0 years ago by User6891250
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1057 users visited in the last hour